Note - no panning/rotation/scaling is involved in the shot, so tracking should be relatively easy. Why is track motion in After Effects so imprecise?I would either do the problematic frames by hand or get a better 3rd party tracking tool. Mocha, the new motion tracking software that comes with After Effects CS4 works much better and is for the most part automatic.
Alternatively, you can make a copy of your footage and color correct it so the saturation and contract are extremely exaggerated, then try tracking again. After you're done, toss the duplicated footage and keep the tracking data.
To answer your second question, you can try using The Smoother tool. Go to Window %26gt; The Smoother. Select the position data on your null or where ever you put your tracking data. With the position data selected, click apply and it will smooth position data.
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